FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index12_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20719679 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 5242320 | 2.864812 | 5.1257067 | 2 |
| CCAGG | 4364265 | 2.615263 | 5.442411 | 1 |
| CCTGG | 4376020 | 2.6081166 | 6.077155 | 1 |
| GAAGA | 4426960 | 2.5512486 | 5.030303 | 2 |
| CTTCT | 4535470 | 2.53561 | 5.446323 | 1 |
| AAGAA | 4475910 | 2.5118356 | 5.145885 | 2 |
| CTGGA | 4194955 | 2.451865 | 8.602863 | 1 |
| TCCAG | 4073790 | 2.3643355 | 5.2906175 | 2 |
| CTCCT | 4047190 | 2.3197906 | 7.16601 | 1 |
| CTGGG | 3775200 | 2.26593 | 8.161437 | 1 |
| CAGGA | 3807440 | 2.237478 | 5.390373 | 1 |
| CTTCA | 3914960 | 2.2006145 | 5.6033707 | 1 |
| CTCCA | 3766165 | 2.1704564 | 7.3254504 | 1 |
| CCCAG | 3642515 | 2.1674387 | 6.845082 | 1 |
| CAGAA | 3649675 | 2.0885391 | 5.06731 | 1 |
| CTCTG | 3517800 | 2.0306034 | 6.2052174 | 1 |
| CTGGC | 3176505 | 1.8932035 | 5.2218695 | 1 |
| TGGAA | 3254505 | 1.8654157 | 5.1354947 | 2 |
| CTGAA | 3237740 | 1.8427817 | 5.5007586 | 1 |
| CTCAG | 2985725 | 1.7328472 | 5.9546046 | 1 |
| CTTTG | 3028200 | 1.7049179 | 5.0218854 | 1 |
| CTGGT | 2893525 | 1.6820542 | 5.038591 | 1 |
| CTTGG | 2822575 | 1.6408094 | 5.331441 | 1 |